Read SCANCO ISQ and AIM medical image files. More...

#include <vtkScancoCTReader.h>

Inheritance diagram for vtkScancoCTReader:

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Collaboration diagram for vtkScancoCTReader:

[legend]

Public Types
typedef vtkImageReader2	Superclass

Public Types inherited from vtkImageReader2
typedef vtkImageAlgorithm	Superclass

Public Types inherited from vtkImageAlgorithm
typedef vtkAlgorithm	Superclass

Public Types inherited from vtkAlgorithm
enum	DesiredOutputPrecision { SINGLE_PRECISION , DOUBLE_PRECISION , DEFAULT_PRECISION }

typedef vtkObject	Superclass

Public Member Functions
virtual vtkTypeBool	IsA (const char *type)

vtkScancoCTReader *	NewInstance () const

void	PrintSelf (ostream &os, vtkIndent indent) VTK_DICOM_OVERRIDE
	Print information about this object.

const char *	GetFileExtensions () VTK_DICOM_OVERRIDE
	Valid extensions for this file type.

const char *	GetDescriptiveName () VTK_DICOM_OVERRIDE
	Return a descriptive name that might be useful in a GUI.

int	CanReadFile (const char *filename) VTK_DICOM_OVERRIDE
	Return true if this reader can read the given file.

const char *	GetVersion ()
	Get a string that states the version of the file header.

int	GetPatientIndex ()
	Get the patient index from the header.

int	GetScannerID ()
	Get the scanner ID from the header.

const char *	GetCreationDate ()
	Get the creation date as a string.

const char *	GetModificationDate ()
	Get the date when the data was last modified.

double	GetSliceThickness ()
	Get the slice thickness in millimeters.

double	GetSliceIncrement ()
	Get the slice increment in millimeters.

double	GetStartPosition ()
	Get the position of the first slice in millimeters.

double	GetEndPosition ()
	Get the position of the final slice in millimeters.

double	GetZPosition ()
	Get the location of the edge of a locator scan.

virtual double *	GetDataRange ()
	Get the data range, as stored in the file header.

virtual void	GetDataRange (double &, double &)

virtual void	GetDataRange (double[2])

double	GetMuScaling ()
	Get the scaling factor from linear attenuation [1/cm] to data values.

int	GetNumberOfSamples ()
	Get the number of samples.

int	GetNumberOfProjections ()
	Get the number of projections.

double	GetScanDistance ()
	Get the scan distance (in millimeters).

int	GetScannerType ()
	Get the scanner type, as an integer code.

double	GetSampleTime ()
	Get the sample time (in milliseconds).

int	GetMeasurementIndex ()
	Get the index measurement.

int	GetSite ()
	Get an integer value that identifies the site on the body.

double	GetReferenceLine ()
	Get the reference line (in millimeters).

int	GetReconstructionAlg ()
	Get an integer value that identifies the reconstruction algorithm.

const char *	GetPatientName ()
	Get a descriptive name for this scan.

double	GetEnergy ()
	Get the X-ray energy (in kVp).

double	GetIntensity ()
	Get the X-ray intensity (in mA).

double	GetRescaleSlope ()
	Get the slope and intercept for rescaling the scalar values. More...

double	GetRescaleIntercept ()

int	GetRescaleType ()
	Get the rescale type as an integer code.

const char *	GetRescaleUnits ()
	Get the units of the data after rescaling with slope and intercept.

double	GetMuWater ()
	Get the linear attenuation of water, in units of [1/cm].

const char *	GetCalibrationData ()
	Get the calibration data (energy, filtration, etc.)

virtual int *	GetScanDimensionsPixels ()
	Get the full scan dimensions in pixels.

virtual void	GetScanDimensionsPixels (int &, int &, int &)

virtual void	GetScanDimensionsPixels (int[3])

virtual double *	GetScanDimensionsPhysical ()
	Get the full scan dimensions in millimeters.

virtual void	GetScanDimensionsPhysical (double &, double &, double &)

virtual void	GetScanDimensionsPhysical (double[3])

void *	GetRawHeader ()
	Get the raw header information (512 bytes) from the file.

Public Member Functions inherited from vtkImageReader2
vtkImageReader2 *	NewInstance () const

virtual void	SetFileName (const char *)

virtual char *	GetFileName ()

virtual void	SetFileNames (vtkStringArray *)

virtual vtkStringArray *	GetFileNames ()

virtual void	SetFilePrefix (const char *)

virtual char *	GetFilePrefix ()

virtual void	SetFilePattern (const char *)

virtual char *	GetFilePattern ()

virtual void	SetMemoryBuffer (void *)

virtual void *	GetMemoryBuffer ()

virtual void	SetMemoryBufferLength (vtkIdType buflen)

vtkIdType	GetMemoryBufferLength ()

virtual void	SetDataScalarType (int type)

virtual void	SetDataScalarTypeToFloat ()

virtual void	SetDataScalarTypeToDouble ()

virtual void	SetDataScalarTypeToInt ()

virtual void	SetDataScalarTypeToUnsignedInt ()

virtual void	SetDataScalarTypeToShort ()

virtual void	SetDataScalarTypeToUnsignedShort ()

virtual void	SetDataScalarTypeToChar ()

virtual void	SetDataScalarTypeToSignedChar ()

virtual void	SetDataScalarTypeToUnsignedChar ()

virtual int	GetDataScalarType ()

virtual void	SetNumberOfScalarComponents (int)

virtual int	GetNumberOfScalarComponents ()

virtual void	SetDataExtent (int, int, int, int, int, int)

virtual void	SetDataExtent (int[6])

virtual int *	GetDataExtent ()

virtual void	GetDataExtent (int &, int &, int &, int &, int &, int &)

virtual void	GetDataExtent (int[6])

virtual void	SetFileDimensionality (int)

int	GetFileDimensionality ()

virtual void	SetDataSpacing (double, double, double)

virtual void	SetDataSpacing (double[3])

virtual double *	GetDataSpacing ()

virtual void	GetDataSpacing (double &, double &, double &)

virtual void	GetDataSpacing (double[3])

virtual void	SetDataOrigin (double, double, double)

virtual void	SetDataOrigin (double[3])

virtual double *	GetDataOrigin ()

virtual void	GetDataOrigin (double &, double &, double &)

virtual void	GetDataOrigin (double[3])

unsigned long	GetHeaderSize ()

unsigned long	GetHeaderSize (unsigned long slice)

virtual void	SetHeaderSize (unsigned long size)

virtual void	SetDataByteOrderToBigEndian ()

virtual void	SetDataByteOrderToLittleEndian ()

virtual int	GetDataByteOrder ()

virtual void	SetDataByteOrder (int)

virtual const char *	GetDataByteOrderAsString ()

virtual void	SetFileNameSliceOffset (int)

virtual int	GetFileNameSliceOffset ()

virtual void	SetFileNameSliceSpacing (int)

virtual int	GetFileNameSliceSpacing ()

virtual void	SetSwapBytes (int)

virtual int	GetSwapBytes ()

virtual void	SwapBytesOn ()

virtual void	SwapBytesOff ()

ifstream *	GetFile ()

virtual unsigned long *	GetDataIncrements ()

virtual void	GetDataIncrements (unsigned long data[4])

virtual int	OpenFile ()

virtual void	SeekFile (int i, int j, int k)

virtual void	FileLowerLeftOn ()

virtual void	FileLowerLeftOff ()

virtual int	GetFileLowerLeft ()

virtual void	SetFileLowerLeft (int)

virtual void	ComputeInternalFileName (int slice)

virtual char *	GetInternalFileName ()

virtual int	CanReadFile (const char *vtkNotUsed(fname))

Public Member Functions inherited from vtkImageAlgorithm
vtkImageAlgorithm *	NewInstance () const

vtkImageData *	GetOutput ()

vtkImageData *	GetOutput (int)

virtual void	SetOutput (vtkDataObject *d)

int	ProcessRequest (vtkInformation , vtkInformationVector , vtkInformationVector ) VTK_OVERRIDE

void	SetInputData (vtkDataObject *)

void	SetInputData (int, vtkDataObject *)

vtkDataObject *	GetInput (int port)

vtkDataObject *	GetInput ()

vtkImageData *	GetImageDataInput (int port)

virtual void	AddInputData (vtkDataObject *)

virtual void	AddInputData (int, vtkDataObject *)

Public Member Functions inherited from vtkAlgorithm
vtkAlgorithm *	NewInstance () const

int	HasExecutive ()

vtkExecutive *	GetExecutive ()

virtual void	SetExecutive (vtkExecutive *executive)

int	ProcessRequest (vtkInformation request, vtkCollection inInfo, vtkInformationVector *outInfo)

virtual int	ComputePipelineMTime (vtkInformation request, vtkInformationVector inInfoVec, vtkInformationVector outInfoVec, int requestFromOutputPort, vtkMTimeType *mtime)

virtual int	ModifyRequest (vtkInformation *request, int when)

vtkInformation *	GetInputPortInformation (int port)

vtkInformation *	GetOutputPortInformation (int port)

virtual vtkInformation *	GetInformation ()

virtual void	SetInformation (vtkInformation *)

int	GetNumberOfInputPorts ()

int	GetNumberOfOutputPorts ()

void	Register (vtkObjectBase *o) VTK_OVERRIDE

void	UnRegister (vtkObjectBase *o) VTK_OVERRIDE

virtual void	SetAbortExecute (int)

virtual int	GetAbortExecute ()

virtual void	AbortExecuteOn ()

virtual void	AbortExecuteOff ()

virtual void	SetProgress (double)

virtual double	GetProgress ()

void	UpdateProgress (double amount)

void	SetProgressText (const char *ptext)

virtual char *	GetProgressText ()

virtual unsigned long	GetErrorCode ()

virtual void	SetInputArrayToProcess (int idx, int port, int connection, int fieldAssociation, const char *name)

virtual void	SetInputArrayToProcess (int idx, int port, int connection, int fieldAssociation, int fieldAttributeType)

virtual void	SetInputArrayToProcess (int idx, vtkInformation *info)

virtual void	SetInputArrayToProcess (int idx, int port, int connection, const char fieldAssociation, const char attributeTypeorName)

vtkInformation *	GetInputArrayInformation (int idx)

void	RemoveAllInputs ()

vtkDataObject *	GetOutputDataObject (int port)

vtkDataObject *	GetInputDataObject (int port, int connection)

virtual void	SetInputConnection (int port, vtkAlgorithmOutput *input)

virtual void	SetInputConnection (vtkAlgorithmOutput *input)

virtual void	AddInputConnection (int port, vtkAlgorithmOutput *input)

virtual void	AddInputConnection (vtkAlgorithmOutput *input)

virtual void	RemoveInputConnection (int port, vtkAlgorithmOutput *input)

virtual void	RemoveInputConnection (int port, int idx)

virtual void	RemoveAllInputConnections (int port)

virtual void	SetInputDataObject (int port, vtkDataObject *data)

virtual void	SetInputDataObject (vtkDataObject *data)

virtual void	AddInputDataObject (int port, vtkDataObject *data)

virtual void	AddInputDataObject (vtkDataObject *data)

vtkAlgorithmOutput *	GetOutputPort (int index)

vtkAlgorithmOutput *	GetOutputPort ()

int	GetNumberOfInputConnections (int port)

int	GetTotalNumberOfInputConnections ()

vtkAlgorithmOutput *	GetInputConnection (int port, int index)

vtkAlgorithm *	GetInputAlgorithm (int port, int index, int &algPort)

vtkAlgorithm *	GetInputAlgorithm (int port, int index)

vtkAlgorithm *	GetInputAlgorithm ()

vtkExecutive *	GetInputExecutive (int port, int index)

vtkExecutive *	GetInputExecutive ()

vtkInformation *	GetInputInformation (int port, int index)

vtkInformation *	GetInputInformation ()

vtkInformation *	GetOutputInformation (int port)

virtual void	Update (int port)

virtual void	Update ()

virtual int	Update (int port, vtkInformationVector *requests)

virtual int	Update (vtkInformation *requests)

virtual int	UpdatePiece (int piece, int numPieces, int ghostLevels, const int extents[6]=0)

virtual int	UpdateExtent (const int extents[6])

virtual int	UpdateTimeStep (double time, int piece=-1, int numPieces=1, int ghostLevels=0, const int extents[6]=0)

virtual void	UpdateInformation ()

virtual void	UpdateDataObject ()

virtual void	PropagateUpdateExtent ()

virtual void	UpdateWholeExtent ()

void	ConvertTotalInputToPortConnection (int ind, int &port, int &conn)

virtual void	SetReleaseDataFlag (int)

virtual int	GetReleaseDataFlag ()

void	ReleaseDataFlagOn ()

void	ReleaseDataFlagOff ()

int	UpdateExtentIsEmpty (vtkInformation pinfo, vtkDataObject output)

int	UpdateExtentIsEmpty (vtkInformation *pinfo, int extentType)

int	SetUpdateExtentToWholeExtent (int port)

int	SetUpdateExtentToWholeExtent ()

void	SetUpdateExtent (int port, int piece, int numPieces, int ghostLevel)

void	SetUpdateExtent (int piece, int numPieces, int ghostLevel)

void	SetUpdateExtent (int port, int extent[6])

void	SetUpdateExtent (int extent[6])

int *	GetUpdateExtent ()

int *	GetUpdateExtent (int port)

void	GetUpdateExtent (int &x0, int &x1, int &y0, int &y1, int &z0, int &z1)

void	GetUpdateExtent (int port, int &x0, int &x1, int &y0, int &y1, int &z0, int &z1)

void	GetUpdateExtent (int extent[6])

void	GetUpdateExtent (int port, int extent[6])

int	GetUpdatePiece ()

int	GetUpdatePiece (int port)

int	GetUpdateNumberOfPieces ()

int	GetUpdateNumberOfPieces (int port)

int	GetUpdateGhostLevel ()

int	GetUpdateGhostLevel (int port)

void	SetProgressObserver (vtkProgressObserver *)

virtual vtkProgressObserver *	GetProgressObserver ()

Public Member Functions inherited from vtkObject
	vtkBaseTypeMacro (vtkObject, vtkObjectBase)

virtual void	DebugOn ()

virtual void	DebugOff ()

bool	GetDebug ()

void	SetDebug (bool debugFlag)

virtual void	Modified ()

virtual vtkMTimeType	GetMTime ()

unsigned long	AddObserver (unsigned long event, vtkCommand *, float priority=0.0f)

unsigned long	AddObserver (const char event, vtkCommand , float priority=0.0f)

vtkCommand *	GetCommand (unsigned long tag)

void	RemoveObserver (vtkCommand *)

void	RemoveObservers (unsigned long event, vtkCommand *)

void	RemoveObservers (const char event, vtkCommand )

int	HasObserver (unsigned long event, vtkCommand *)

int	HasObserver (const char event, vtkCommand )

void	RemoveObserver (unsigned long tag)

void	RemoveObservers (unsigned long event)

void	RemoveObservers (const char *event)

void	RemoveAllObservers ()

int	HasObserver (unsigned long event)

int	HasObserver (const char *event)

template<class U , class T >
unsigned long	AddObserver (unsigned long event, U observer, void(T::*callback)(), float priority=0.0f)

template<class U , class T >
unsigned long	AddObserver (unsigned long event, U observer, void(T::callback)(vtkObject , unsigned long, void *), float priority=0.0f)

template<class U , class T >
unsigned long	AddObserver (unsigned long event, U observer, bool(T::callback)(vtkObject , unsigned long, void *), float priority=0.0f)

int	InvokeEvent (unsigned long event, void *callData)

int	InvokeEvent (const char event, void callData)

int	InvokeEvent (unsigned long event)

int	InvokeEvent (const char *event)

Public Member Functions inherited from vtkObjectBase
const char *	GetClassName () const

virtual void	Delete ()

virtual void	FastDelete ()

void	InitializeObjectBase ()

void	Print (ostream &os)

virtual void	PrintHeader (ostream &os, vtkIndent indent)

virtual void	PrintTrailer (ostream &os, vtkIndent indent)

int	GetReferenceCount ()

void	SetReferenceCount (int)

void	PrintRevisions (ostream &)

Static Public Member Functions
static vtkScancoCTReader *	New ()
	Static method for construction.

static vtkTypeBool	IsTypeOf (const char *type)

static vtkScancoCTReader *	SafeDownCast (vtkObjectBase *o)

Static Public Member Functions inherited from vtkImageReader2
static vtkImageReader2 *	New ()

static vtkTypeBool	IsTypeOf (const char *type)

static vtkImageReader2 *	SafeDownCast (vtkObjectBase *o)

Static Public Member Functions inherited from vtkImageAlgorithm
static vtkTypeBool	IsTypeOf (const char *type)

static vtkImageAlgorithm *	SafeDownCast (vtkObjectBase *o)

Static Public Member Functions inherited from vtkAlgorithm
static vtkAlgorithm *	New ()

static vtkTypeBool	IsTypeOf (const char *type)

static vtkAlgorithm *	SafeDownCast (vtkObjectBase *o)

static vtkInformationIntegerKey *	INPUT_IS_OPTIONAL ()

static vtkInformationIntegerKey *	INPUT_IS_REPEATABLE ()

static vtkInformationInformationVectorKey *	INPUT_REQUIRED_FIELDS ()

static vtkInformationStringVectorKey *	INPUT_REQUIRED_DATA_TYPE ()

static vtkInformationInformationVectorKey *	INPUT_ARRAYS_TO_PROCESS ()

static vtkInformationIntegerKey *	INPUT_PORT ()

static vtkInformationIntegerKey *	INPUT_CONNECTION ()

static vtkInformationIntegerKey *	CAN_PRODUCE_SUB_EXTENT ()

static vtkInformationIntegerKey *	CAN_HANDLE_PIECE_REQUEST ()

static void	SetDefaultExecutivePrototype (vtkExecutive *proto)

Static Public Member Functions inherited from vtkObject
static vtkObject *	New ()

static void	BreakOnError ()

static void	SetGlobalWarningDisplay (int val)

static void	GlobalWarningDisplayOn ()

static void	GlobalWarningDisplayOff ()

static int	GetGlobalWarningDisplay ()

Static Public Member Functions inherited from vtkObjectBase
static vtkTypeBool	IsTypeOf (const char *name)

static vtkObjectBase *	New ()

Protected Member Functions
virtual vtkObjectBase *	NewInstanceInternal () const

int	RequestInformation (vtkInformation request, vtkInformationVector inputVector, vtkInformationVector outputVector) VTK_DICOM_OVERRIDE
	Read the header information.

int	RequestData (vtkInformation request, vtkInformationVector inputVector, vtkInformationVector outputVector) VTK_DICOM_OVERRIDE
	Read the voxel data.

void	InitializeHeader ()
	Initialize the header information.

int	ReadISQHeader (std::istream *file, unsigned long bytesRead)
	Read an ISQ header.

int	ReadAIMHeader (std::istream *file, unsigned long bytesRead)
	Read AIM header.

void	DecodeDate (const void *data, int &year, int &month, int &day, int &hour, int &minute, int &second, int &millis)
	Convert a VMS timestamp to a calendar date.

Protected Member Functions inherited from vtkImageReader2
virtual void	ExecuteInformation ()

virtual void	ExecuteDataWithInformation (vtkDataObject data, vtkInformation outInfo)

virtual void	ComputeDataIncrements ()

Protected Member Functions inherited from vtkImageAlgorithm
virtual int	RequestUpdateExtent (vtkInformation , vtkInformationVector , vtkInformationVector )

virtual void	CopyInputArrayAttributesToOutput (vtkInformation request, vtkInformationVector inputVector, vtkInformationVector outputVector)

virtual void	ExecuteData (vtkDataObject *output)

virtual void	Execute ()

virtual void	AllocateOutputData (vtkImageData out, vtkInformation outInfo, int *uExtent)

virtual vtkImageData *	AllocateOutputData (vtkDataObject out, vtkInformation outInfo)

virtual void	CopyAttributeData (vtkImageData in, vtkImageData out, vtkInformationVector **inputVector)

int	FillOutputPortInformation (int port, vtkInformation *info) VTK_OVERRIDE

int	FillInputPortInformation (int port, vtkInformation *info) VTK_OVERRIDE

Protected Member Functions inherited from vtkAlgorithm
virtual void	SetNumberOfInputPorts (int n)

virtual void	SetNumberOfOutputPorts (int n)

int	InputPortIndexInRange (int index, const char *action)

int	OutputPortIndexInRange (int index, const char *action)

int	GetInputArrayAssociation (int idx, vtkInformationVector **inputVector)

int	GetInputArrayAssociation (int idx, int connection, vtkInformationVector **inputVector)

int	GetInputArrayAssociation (int idx, vtkDataObject *input)

vtkDataArray *	GetInputArrayToProcess (int idx, vtkInformationVector **inputVector)

vtkDataArray *	GetInputArrayToProcess (int idx, vtkInformationVector **inputVector, int &association)

vtkDataArray *	GetInputArrayToProcess (int idx, int connection, vtkInformationVector **inputVector)

vtkDataArray *	GetInputArrayToProcess (int idx, int connection, vtkInformationVector **inputVector, int &association)

vtkDataArray *	GetInputArrayToProcess (int idx, vtkDataObject *input)

vtkDataArray *	GetInputArrayToProcess (int idx, vtkDataObject *input, int &association)

vtkAbstractArray *	GetInputAbstractArrayToProcess (int idx, vtkInformationVector **inputVector)

vtkAbstractArray *	GetInputAbstractArrayToProcess (int idx, vtkInformationVector **inputVector, int &association)

vtkAbstractArray *	GetInputAbstractArrayToProcess (int idx, int connection, vtkInformationVector **inputVector)

vtkAbstractArray *	GetInputAbstractArrayToProcess (int idx, int connection, vtkInformationVector **inputVector, int &association)

vtkAbstractArray *	GetInputAbstractArrayToProcess (int idx, vtkDataObject *input)

vtkAbstractArray *	GetInputAbstractArrayToProcess (int idx, vtkDataObject *input, int &association)

vtkInformation *	GetInputArrayFieldInformation (int idx, vtkInformationVector **inputVector)

virtual vtkExecutive *	CreateDefaultExecutive ()

virtual void	SetErrorCode (unsigned long)

void	ReportReferences (vtkGarbageCollector *) VTK_OVERRIDE

virtual void	SetNthInputConnection (int port, int index, vtkAlgorithmOutput *input)

virtual void	SetNumberOfInputConnections (int port, int n)

void	SetInputDataInternal (int port, vtkDataObject *input)

void	AddInputDataInternal (int port, vtkDataObject *input)

Protected Member Functions inherited from vtkObject
void	RegisterInternal (vtkObjectBase *, vtkTypeBool check) VTK_OVERRIDE

void	UnRegisterInternal (vtkObjectBase *, vtkTypeBool check) VTK_OVERRIDE

void	InternalGrabFocus (vtkCommand mouseEvents, vtkCommand keypressEvents=NULL)

void	InternalReleaseFocus ()

Protected Member Functions inherited from vtkObjectBase
virtual void	CollectRevisions (ostream &)

	vtkObjectBase (const vtkObjectBase &)

void	operator= (const vtkObjectBase &)

Static Protected Member Functions
static int	CheckVersion (const char header[16])
	Check the file header to see what type of file it is. More...

static int	DecodeInt (const void *data)
	Convert char data to 32-bit int (little-endian).

static float	DecodeFloat (const void *data)
	Convert char data to float (single precision).

static double	StringToDouble (const char cp, char *cpp=0)
	Convert a string to a double precision value.

static int	StringToInt (const char cp, char *cpp=0)
	Convert a string to an int.

static double	DecodeDouble (const void *data)
	Convert char data to float (double precision).

static void	StripString (char dest, const char source, size_t l)
	Strip a string by removing trailing whitespace. More...

Static Protected Member Functions inherited from vtkAlgorithm
static vtkInformationIntegerKey *	PORT_REQUIREMENTS_FILLED ()

Protected Attributes
char	Version [18]

char	PatientName [42]

int	PatientIndex

int	ScannerID

char	CreationDate [32]

char	ModificationDate [32]

int	ScanDimensionsPixels [3]

double	ScanDimensionsPhysical [3]

double	SliceThickness

double	SliceIncrement

double	StartPosition

double	EndPosition

double	ZPosition

double	DataRange [2]

double	MuScaling

int	NumberOfSamples

int	NumberOfProjections

double	ScanDistance

double	SampleTime

int	ScannerType

int	MeasurementIndex

int	Site

int	ReconstructionAlg

double	ReferenceLine

double	Energy

double	Intensity

int	RescaleType

char	RescaleUnits [18]

char	CalibrationData [66]

double	RescaleSlope

double	RescaleIntercept

double	MuWater

char *	RawHeader

int	Compression

Protected Attributes inherited from vtkImageReader2
vtkStringArray *	FileNames

char *	InternalFileName

char *	FileName

char *	FilePrefix

char *	FilePattern

int	NumberOfScalarComponents

int	FileLowerLeft

void *	MemoryBuffer

vtkIdType	MemoryBufferLength

ifstream *	File

unsigned long	DataIncrements [4]

int	DataExtent [6]

int	SwapBytes

int	FileDimensionality

unsigned long	HeaderSize

int	DataScalarType

unsigned long	ManualHeaderSize

double	DataSpacing [3]

double	DataOrigin [3]

int	FileNameSliceOffset

int	FileNameSliceSpacing

Protected Attributes inherited from vtkAlgorithm
vtkInformation *	Information

unsigned long	ErrorCode

double	Progress

char *	ProgressText

vtkProgressObserver *	ProgressObserver

Protected Attributes inherited from vtkObject
bool	Debug

vtkTimeStamp	MTime

vtkSubjectHelper *	SubjectHelper

Protected Attributes inherited from vtkObjectBase
vtkAtomicInt32	ReferenceCount

vtkWeakPointerBase **	WeakPointers

Additional Inherited Members
Public Attributes inherited from vtkAlgorithm
int	AbortExecute

Static Protected Attributes inherited from vtkAlgorithm
static vtkExecutive *	DefaultExecutivePrototype

Detailed Description

Read SCANCO ISQ and AIM medical image files.

This class reads ISQ and AIM files, which are used for high-resolution computed tomography. The information that it provides uses different units as compared to the original files: all distances are given in millimeters (instead of micrometers), times are given in milliseconds (instead of microseconds), voltage and current given in kV and mA (instead of volts and microamps). If the scanner was calibrated, then the data values can be converted to calibrated units. To convert to linear attenuation coefficients [cm^-1], simply divide the data values by the MuScaling. To convert to density values, multiply the data values by the RescaleSlope and add the RescaleIntercept. To convert to Hounsfield units, multiply by 1000/(MuScaling*MuWater) and subtract 1000.

Created at the Calgary Image Processing and Analysis Centre (CIPAC).

Member Function Documentation

◆ CheckVersion()

static int vtkScancoCTReader::CheckVersion ( const char header[16] )

staticprotected

Check the file header to see what type of file it is.

Return values are: 0 if unrecognized, 1 if ISQ/RAD, 2 if AIM 020, 3 if AIM 030.

◆ GetRescaleSlope()

double vtkScancoCTReader::GetRescaleSlope ( )

inline

Get the slope and intercept for rescaling the scalar values.

These values allow calibration of the data to real values. Use the equation v = u*RescaleSlope + RescaleIntercept.

◆ IsA()

virtual vtkTypeBool vtkScancoCTReader::IsA ( const char * name )

virtual

Return 1 if this class is the same type of (or a subclass of) the named class. Returns 0 otherwise. This method works in combination with vtkTypeMacro found in vtkSetGet.h.

Reimplemented from vtkImageReader2.

◆ StripString()

static void vtkScancoCTReader::StripString	(	char *	dest,
		const char *	source,
		size_t	l
	)

staticprotected

Strip a string by removing trailing whitespace.

The dest must have a size of at least l+1.

The documentation for this class was generated from the following file:

vtkScancoCTReader.h

Public Types

Public Member Functions

Static Public Member Functions

Protected Member Functions

Static Protected Member Functions