vtkNIFTIReader.h

/*=========================================================================
 
  Program:   Visualization Toolkit
  Module:    vtkNIFTIReader.h
 
  Copyright (c) Ken Martin, Will Schroeder, Bill Lorensen
  All rights reserved.
  See Copyright.txt or http://www.kitware.com/Copyright.htm for details.
 
     This software is distributed WITHOUT ANY WARRANTY; without even
     the implied warranty of MERCHANTABILITY or FITNESS FOR A PARTICULAR
     PURPOSE.  See the above copyright notice for more information.
 
=========================================================================*/
#ifndef vtkNIFTIReader_h
#define vtkNIFTIReader_h
 
#include "vtkImageReader2.h"
#include "vtkDICOMModule.h" // For export macro
#include "vtkDICOMConfig.h" // For configuration details
 
// Declare VTK classes within VTK's optional namespace
#if defined(VTK_ABI_NAMESPACE_BEGIN)
VTK_ABI_NAMESPACE_BEGIN
#endif
 
class vtkMatrix4x4;
 
#if defined(VTK_ABI_NAMESPACE_BEGIN)
VTK_ABI_NAMESPACE_END
#endif
 
class vtkNIFTIHeader;
 
struct nifti_1_header;
 
//----------------------------------------------------------------------------
class VTKDICOM_EXPORT vtkNIFTIReader : public vtkImageReader2
{
public:
  static vtkNIFTIReader *New();
  vtkTypeMacro(vtkNIFTIReader, vtkImageReader2);
 
  void PrintSelf(ostream& os, vtkIndent indent) VTK_DICOM_OVERRIDE;
 
  const char* GetFileExtensions() VTK_DICOM_OVERRIDE {
    return ".nii .nii.gz .img .img.gz .hdr .hdr.gz"; }
 
  const char* GetDescriptiveName() VTK_DICOM_OVERRIDE {
    return "NIfTI"; }
 
  int CanReadFile(const char* filename) VTK_DICOM_OVERRIDE;
 
 
  vtkGetMacro(TimeAsVector, int);
  vtkSetMacro(TimeAsVector, int);
  vtkBooleanMacro(TimeAsVector, int);
 
  int GetTimeDimension() { return this->Dim[4]; }
  double GetTimeSpacing() { return this->PixDim[4]; }
 
 
  double GetRescaleSlope() { return this->RescaleSlope; }
  double GetRescaleIntercept() { return this->RescaleIntercept; }
 
 
  vtkGetMacro(PlanarRGB, bool);
  vtkSetMacro(PlanarRGB, bool);
  vtkBooleanMacro(PlanarRGB, bool);
 
 
  double GetQFac() { return this->QFac; }
 
 
  vtkMatrix4x4 *GetQFormMatrix() { return this->QFormMatrix; }
 
 
  vtkMatrix4x4 *GetSFormMatrix() { return this->SFormMatrix; }
 
  vtkNIFTIHeader *GetNIFTIHeader();
 
protected:
  vtkNIFTIReader();
  ~vtkNIFTIReader() VTK_DICOM_OVERRIDE;
 
  int RequestInformation(
    vtkInformation* request, vtkInformationVector** inputVector,
    vtkInformationVector* outputVector) VTK_DICOM_OVERRIDE;
 
  int RequestData(
    vtkInformation* request, vtkInformationVector** inputVector,
    vtkInformationVector* outputVector) VTK_DICOM_OVERRIDE;
 
 
  static bool CheckExtension(const char *fname, const char *ext);
 
 
  static char *ReplaceExtension(
    const char *fname, const char *ext1, const char *ext2);
 
  static int CheckNIFTIVersion(const nifti_1_header *hdr);
 
  static bool CheckAnalyzeHeader(const nifti_1_header *hdr);
 
  int TimeAsVector;
 
  double RescaleIntercept;
  double RescaleSlope;
 
  double QFac;
 
  vtkMatrix4x4 *QFormMatrix;
  vtkMatrix4x4 *SFormMatrix;
 
  int Dim[8];
 
  double PixDim[8];
 
  vtkNIFTIHeader *NIFTIHeader;
 
  bool PlanarRGB;
 
private:
#ifdef VTK_DICOM_DELETE
  vtkNIFTIReader(const vtkNIFTIReader&) VTK_DICOM_DELETE;
  void operator=(const vtkNIFTIReader&) VTK_DICOM_DELETE;
#else
  vtkNIFTIReader(const vtkNIFTIReader&) = delete;
  void operator=(const vtkNIFTIReader&) = delete;
#endif
};
 
#endif // vtkNIFTIReader_h